From b255338295587246292dc978e7d4d5687ee01fb4 Mon Sep 17 00:00:00 2001
From: Samuel Fadel <samuelfadel@gmail.com>
Date: Fri, 19 Aug 2016 14:20:57 -0300
Subject: Scripts and other files for building all datasets.

---
 datasets/newsgroups/newsgroups_extract.py | 137 ++++++++++++++++++++++++++++++
 1 file changed, 137 insertions(+)
 create mode 100644 datasets/newsgroups/newsgroups_extract.py

(limited to 'datasets/newsgroups/newsgroups_extract.py')

diff --git a/datasets/newsgroups/newsgroups_extract.py b/datasets/newsgroups/newsgroups_extract.py
new file mode 100644
index 0000000..51c5030
--- /dev/null
+++ b/datasets/newsgroups/newsgroups_extract.py
@@ -0,0 +1,137 @@
+from sklearn.decomposition import PCA
+from sklearn.feature_extraction.text import TfidfVectorizer
+
+import hashlib
+import logging
+import numpy as np
+import os
+import os.path
+import sys
+import tarfile
+import wget
+
+
+DATA_URL = "http://kdd.ics.uci.edu/databases/20newsgroups/20_newsgroups.tar.gz"
+DATA_FILE = "20_newsgroups.tar.gz"
+DATA_SHA256 = "b7bbf82b7831f7dbb1a09d9312f66fa78565c8de25526999b0d66f69d37e414"
+
+
+def build_topic_corpus(corpus_file, n, topic):
+    logging.info("Extracting corpus for topic '{}'".format(topic))
+    topic_items = []
+    names = corpus_file.getnames()
+    for name in names:
+        if topic in name:
+            ti = corpus_file.getmember(name)
+            if ti.isfile():
+                topic_items.append(name)
+    if len(topic_items) == 0:
+        # Topic does not exist (no items fetched)
+        raise ValueError(topic)
+
+    topic_ids = []
+    topic_corpus = []
+    indices = np.arange(len(topic_items))
+    np.random.shuffle(indices)
+    indices = indices[:n]
+    for i in indices:
+        ti = corpus_file.getmember(topic_items[i])
+        with corpus_file.extractfile(ti) as f:
+            try:
+                contents = str(f.read(), encoding="utf8")
+            except ValueError as e:
+                logging.warn("Encoding error in '{}': {}".format(ti.name, e))
+                continue
+            _, item_id = os.path.split(ti.name)
+            topic_ids.append(item_id)
+            topic_corpus.append(contents)
+
+    return topic_ids, topic_corpus
+
+
+def build_corpus(n, topics):
+    """
+    Builds a corpus with each topic, with N items each.
+    Returns a list of document IDs and a corpus which is a dict where each topic
+    is a key mapped to a list of document contents.
+    """
+    ids = []
+    corpus = dict()
+    with tarfile.open(DATA_FILE, "r:gz") as f:
+        for topic in topics:
+            topic_ids, topic_corpus = build_topic_corpus(f, n, topic)
+            corpus[topic] = topic_corpus
+            ids.extend(topic_ids)
+    return ids, corpus
+
+
+if __name__ == "__main__":
+    if len(sys.argv) < 4:
+        print("usage: {} STOP_WORDS N TOPIC [ TOPIC [ ... ] ]".format(sys.argv[0]))
+        print("The program reads the file STOP_WORDS for stop words, extracts"
+            + " and generates a BoW model from N random articles of each TOPIC")
+        exit(1)
+
+    logging.basicConfig(filename="newsgroups_extract.log",
+                        format="%(levelname)s:%(message)s",
+                        level=logging.INFO)
+
+    if not os.path.exists(DATA_FILE):
+        logging.info("Downloading data from '{}'".format(DATA_URL))
+        wget.download(DATA_URL, DATA_FILE)
+        with open(DATA_FILE, "rb") as f:
+            if not hashlib.sha256(f.read()).hexdigest() != DATA_SHA256:
+                logging.error("'{}' is corrupted; aborting".format(DATA_FILE))
+                exit(1)
+
+    # Read stop words list
+    try:
+        with open(sys.argv[1]) as stop_words_file:
+            stop_words = stop_words_file.read().split()
+    except Exception as e:
+        logging.error("Could not read stop words: {}".format(e))
+        exit(1)
+
+    try:
+        n = int(sys.argv[2])
+        if (n < 2) or (n > 1000):
+            raise ValueError("N must be between 2 and 1000")
+    except ValueError as e:
+        logging.error("Invalid argument: {}".format(e))
+        exit(1)
+
+    # Extract text corpus from tarball
+    logging.info("Building corpus")
+    topics = sys.argv[3:]
+    try:
+        ids, corpus = build_corpus(n, topics)
+    except ValueError as e:
+        logging.error("Invalid topic: {}".format(e))
+        exit(1)
+
+    corpus_text = []
+    for topic_items in corpus.values():
+        corpus_text.extend(topic_items)
+
+    # Compute the TF-IDF matrix
+    logging.info("Computing TF-IDF matrix")
+    vectorizer = TfidfVectorizer(min_df=0.01, stop_words=stop_words)
+    X = vectorizer.fit_transform(corpus_text)
+
+    # Reduce data dimensionality using PCA
+    logging.info("Computing PCA and reducing to 512 dimensions")
+    X = PCA(n_components=512, whiten=True).fit_transform(X.toarray())
+
+    # Save all extracted features and related data
+    logging.info("Writing IDs file")
+    ids_fname = "newsgroups-{}-{}.ids".format(n, len(topics))
+    np.savetxt(ids_fname, ids, fmt="%s")
+
+    logging.info("Writing table file")
+    tbl_fname = "newsgroups-{}-{}.tbl".format(n, len(topics))
+    np.savetxt(tbl_fname, X.todense(), fmt="%f")
+
+    logging.info("Writing labels file")
+    labels_fname = "newsgroups-{}-{}.labels".format(n, len(topics))
+    counts = [len(topic_items) for topic_items in corpus.values()]
+    np.savetxt(labels_fname, np.repeat(topics, counts), fmt="%s")
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